XenWiki - User contributions [en]

XB-FEAT-966504

2024-07-20T01:41:34Z

ABell:

=dolk=
This is the community wiki page for the gene ''dolk'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature=

7/19/2024

The ''X. laevis'' L homeolog of this gene, previously ''dolk.S'' in error, was identified as NCBI:444437, XB-model:XBXL10_1g34457 and was added to this gene page.

XB-FEAT-966496

2024-07-20T01:38:28Z

ABell:

=phyhd1=
This is the community wiki page for the gene ''phyhd1'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature=

7/19/2024

The ''X. laevis'' L homeolog of ''phyhd1'', ''phyhd1.L'', was identified as NCBI:108704482, XB-model:XBXL10_1g34458 (previously LOC108704482) and was added to XB-GENEPAGE-966496. LOC108704482 was added as a synonym to this gene.

XB-FEAT-5889658

2024-07-20T01:26:37Z

ABell:

=kif14l=
This is the community wiki page for the gene ''kif14l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

Renamed to kif14l from kif14 on 8/12/2019 by KAB. This gene is not syntenic but is similar to kif14 and therefore can be linked to kif14 orthologues in other species including human. However, there exists a syntenic Xenopus kif14 and therefore this gene should not be renamed back to kif14 except under thorough scrutiny by manual curation.

=nomenclature=

7/19/2024

The ''X. laevis'' S homeolog of this gene was identified as NCBI:108700522, XB-model:XBXL10_1g37812 (previously LOC108700522) and was added to the XB-GENEPAGE-5889658. LOC108700522 was added as a gene synonym.

XB-FEAT-992083

2024-07-20T01:22:59Z

ABell:

=adgrd2=
This is the community wiki page for the gene ''adgrd2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature changes=

3/9/2015

Human symbol has changed for genepage ID: 992083 From gpr144 to ADGRD2
Human symbol has changed for Entrez Gene: 347088. From GPR144 to ADGRD2
Human name has changed for Entrez Gene: 347088. From G protein-coupled receptor 144 to adhesion G protein-coupled receptor D2

7/19/2024

''X. laevis'' L homeolog of ''adgrd2'', ''adgrd2.L'', previously called LOC108698872, was identified as NCBI:108698872, XB-model:XBXL10_1g34624 and added to XB-GENEPAGE-992083. LOC108698872 was added as a gene synonym.

XB-FEAT-29077750

2024-07-16T18:38:33Z

ABell: /* nomenclature changes */

=''pax6l''=

This is the community wiki page for the gene ''pax6l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature changes=

07/16/2024

The ''X. tropicalis'' gene (NCBI:100485335, XB-model:XBXT10g008942) previously named ''LOC100485335'' and referred in the literature as ''pax6.2'' (PMID: 25724657; PMCID: PMC4549229; DOI: 10.1016/j.ydbio.2015.02.012), was identified as a paralog of the ''pax6'' / "paired box 6" gene (NCBI:448447, XB-model:XBXT10g001595) and verified by Xenbase curators. Due to its location on a separate genomic locus (chr7) than ''pax6'' (chr4), it is assigned the name ''pax6l'' / "paired box 6 like".

''X. laevis'' orthologs of ''pax6l'' were identified by synteny and sequence homology as (L homeolog: NCBI-ID:108696727, XB-model:XBXL10_1g31762) and (S homeolog: NCBI:108697776, XB-model:XBXL10_1g33691), previously ''LOC108696727'' and ''LOC108697776'', respectively.

Synonyms for previously assigned/referenced gene symbols ''pax6.2'', ''LOC100485335'', ''LOC108696727'' and ''LOC108697776'' are submitted for addition to the XB-GENEPAGE-29077750 for searchability.

XB-FEAT-29077750

2024-07-16T18:38:18Z

ABell: /* nomenclature changes */

XB-FEAT-29077750

2024-07-16T18:28:21Z

ABell: /* pax6l */

=''pax6l''=

This is the community wiki page for the gene ''pax6l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature changes=

07/16/2024

The ''X. tropicalis'' gene previously named ''LOC100485335'' (NCBI:100485335, XB-model:XBXT10g008942), was identified as a paralog of the ''pax6'' / "paired box 6" gene (NCBI:448447, XB-model:XBXT10g001595)(PMID: 25724657; PMCID: PMC4549229; DOI: 10.1016/j.ydbio.2015.02.012) and verified by Xenbase curators. Due to its location on a separate genomic locus (chr7) than ''pax6'' (chr4), it is assigned a new name ''pax6l'' / "paired box 6 like".

''X. laevis'' orthologs of ''pax6l'' were identified by synteny and sequence homology as (L homeolog: NCBI-ID:108696727, XB-model:XBXL10_1g31762) and (S homeolog: NCBI:108697776, XB-model:XBXL10_1g33691), previously ''LOC108696727'' and ''LOC108697776'', respectively.

XB-FEAT-29082822

2024-07-15T19:05:15Z

ABell: /* LOC100495765 */

=''LOC100495765''=

This is the community wiki page for the gene ''LOC100495765'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature changes=

07/15/2024-AJB

''X. laevis'' orthologs of ''X. tropicalis'' ''LOC100495765'' were identified as (L homeolog) (NCBI-ID:108699156, XB-model:XBXL10_1g36897) and (S homeolog) (NCBI-ID:108700612, XB-model:XBXL10_1g38735), respectively, by synteny and sequence homology. These are temporary symbols that will persist until more descriptive names are identified.

XB-FEAT-6046301

2024-07-15T17:21:18Z

ABell: /* tpm3 */

=tpm3=
This is the community wiki page for the gene ''tpm3'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature changes=

07/15/2024-AJB

''X. tropicalis'' ortholog of ''tpm3'' was identified as NCBI-ID:394917, XB-model:XBXT10g007286, previously "MGC76092", by synteny and sequence homology.

XB-FEAT-29099342

2024-07-15T17:07:43Z

ABell: /* riiad1 */

=''riiad1''=

This is the community wiki page for the gene ''riiad1'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature changes=

07/10/2024-AJB

''X. laevis'' orthologs of ''riiad1'' were identified as NCBI-ID:108699642, XB-model:XBXL10_1g37003 (L homeolog), previously "LOC108699642", and as NCBI-ID:108700434, XB-model:XBXL10_1g38833 (S homeolog), previously "LOC108700434", respectively, by synteny and sequence homology.

XB-FEAT-29092374

2024-07-15T16:30:08Z

ABell: /* LOC116406912 */

=''LOC116406912''=

This is the community wiki page for the gene ''LOC116406912'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature changes=

07/15/2024-AJB

''X. laevis'' orthologs of the ''X. tropicalis'' gene ''LOC116406912'' (NCBI-ID:116406912, XB-model:XBXT10g023307) were identified as ''LOC108699468'' (L homeolog) (NCBI-ID:108699468, XB-model:XBXL10_1g37014) and ''LOC121397605'' (S homeolog) (NCBI-ID:121397605, XB-model:XBXL10_1g38843) by synteny and sequence homology. These are temporary names that will remain as such as they await future identification.

XB-FEAT-29099778

2024-07-11T19:07:10Z

ABell: /* trim46 */

=''trim46''=

This is the community wiki page for the gene ''trim46'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature changes=

07/11/2024-AJB

''X. laevis'' orthologs (L and S homeologs) of ''trim46'' were identified as NCBI-ID:108699478, XB-model:XBXL10_1g2 ('trim46.L') and as NCBI-ID:108700444, XB-model: ('trim46.S'), respectively, previously LOC108699478 and LOC108700444, by synteny and sequence homology.

Talk:XB-FEAT-29084530

2024-07-10T19:04:29Z

ABell: /* dok1 */

=''dok1.2''=

This is the community wiki page for the gene ''dok1.2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature changes=

07/10/2024-AJB

''X. tropicalis'' ''dok1.2'' was identified as NCBI-ID:101730410, XB-model:XBXT10g010055, previously "LOC101730410", by synteny and sequence homology with neighbouring gene ''dok1''. ''dok1.2'' appears to only be present in ''X. tropicalis'' in the current assembly and not in ''X. laevis'' chr1L or chr1S.

Talk:XB-FEAT-29084530

2024-07-10T19:02:34Z

ABell: /* dok1 */

=''dok1''=

This is the community wiki page for the gene ''dok1'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

XB-FEAT-29084530

2024-07-10T19:01:46Z

ABell: /* dok1 */

XB-FEAT-6458887

2024-07-10T17:20:58Z

ABell: /* m1ap */

=''m1ap''=
This is the community wiki page for the gene ''c2orf65'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature changes=

The ''Xenopus'' ''m1ap'' gene was previously ''c2orf65'' and has since been changed.

07/10/2024-AJB

''X. laevis'' ortholog (L homeolog) of ''m1ap'' was identified as NCBI-ID:108704862, XB-model:XBXL10_1g5, previously "LOC108704862", by synteny and sequence homology.

XB-FEAT-6458887

2024-07-10T17:20:43Z

ABell: /* m1ap */

=''c2orf65''=
This is the community wiki page for the gene ''c2orf65'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature changes=

The ''Xenopus'' ''m1ap'' gene was previously ''c2orf65'' and has since been changed.

07/10/2024-AJB

''X. laevis'' ortholog (L homeolog) of ''m1ap'' was identified as NCBI-ID:108704862, XB-model:XBXL10_1g5, previously "LOC108704862", by synteny and sequence homology.

XB-FEAT-22068879

2024-07-10T17:09:09Z

ABell: /* pi16 */

=''pi16''=

This is the community wiki page for the gene ''pi16'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature changes=

07/10/2024-AJB

''X. laevis'' ortholog (L homeolog) of ''pi16'' was identified as NCBI-ID:108704861, XB-model:XBXL10_1g2, previously "LOC108704861", by synteny and sequence homology.

XB-FEAT-941063

2024-06-27T18:08:25Z

ABell: /* nomenclature */

=''lrrc19l''=
This is the community wiki page for the gene ''lrrc19l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature=
06/27/2024

The gene symbol for XB-GENEPAGE-941063 was changed from ''lrrc19'' to ''lrrc19l'', given shared synteny with human ''LRRC19''.

The true ''LRRC19'' gene sequence in human is located in the intronic region of the ''IFT74'' gene, which is flanked by ''TEK'' and ''CAAP1'' genes. This same synteny pattern is observed in a different gene in ''Xenopus'' on chromosome 1 (X.tropicalis NCBI ID:100491155, XB-GENEPAGE-29080546). This (XB-GENEPAGE-941063) now re-named ''lrrc19l'' ("leucine rich repeat containing 19 like") gene in ''Xenopus'' is instead flanked by the ''tie1'' and ''mpl'' genes on one side and ''tmem125'' and ''cfap57'' genes on the other side; This region was examined in humans, and while a syntenic locus was identified, the gene in that position did not blast or align well with this ''lrrc19l'' gene in ''Xenopus'', suggesting it is not represented in humans.

XB-FEAT-941063

2024-06-27T18:07:29Z

ABell: /* lrrc19l */

=''lrrc19l''=
This is the community wiki page for the gene ''lrrc19l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature=
06/27/2024
The gene symbol for XB-GENEPAGE-941063 was changed from ''lrrc19'' to ''lrrc19l'', given shared synteny with human ''LRRC19''.

The true ''LRRC19'' gene sequence in human is located in the intronic region of the ''IFT74'' gene, which is flanked by ''TEK'' and ''CAAP1'' genes. This same synteny pattern is observed in a different gene in ''Xenopus'' on chromosome 1 (X.tropicalis NCBI ID:100491155, XB-GENEPAGE-29080546). This (XB-GENEPAGE-941063) now re-named ''lrrc19l'' ("leucine rich repeat containing 19 like") gene in ''Xenopus'' is instead flanked by the ''tie1'' and ''mpl'' genes on one side and ''tmem125'' and ''cfap57'' genes on the other side; This region was examined in humans, and while a syntenic locus was identified, the gene in that position did not blast or align well with this ''lrrc19l'' gene in ''Xenopus'', suggesting it is not represented in humans.

XB-FEAT-5946283

2024-01-31T18:19:25Z

ABell: /* fcrl5l */

=''fcrl5l''=
This is the community wiki page for the gene ''fcrl5l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature=
31JAN2024

Gene symbol changed from ''XB5946283'' [provisional: fcrl] to ''fcrl5l''.
This gene is part of an ongoing review of FC receptors and will likely be changed again in the near future.

''XB5946283'' and the previous ''LOC100486104'' were added as synonyms.

XB-FEAT-5946283

2024-01-31T18:19:13Z

ABell: /* fcrl5l */

=fcrl5l=
This is the community wiki page for the gene ''fcrl5l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature=
31JAN2024

Gene symbol changed from ''XB5946283'' [provisional: fcrl] to ''fcrl5l''.
This gene is part of an ongoing review of FC receptors and will likely be changed again in the near future.

''XB5946283'' and the previous ''LOC100486104'' were added as synonyms.

XB-FEAT-5797017

2024-01-31T17:45:37Z

ABell: /* trim39l */

=''trim39l''=
This is the community wiki page for the gene ''trim39l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature=
31JAN2024

The '[provisional]' tag was removed from the symbol and the listed L homeolog of this gene was evaluated to be a pseudogene and trim39 like.

The previous symbol, ''XB5797017'', was added as a synonym and the symbol of this gene was changed to ''trim39l'', with the L homeolog pseudogene being given ''trim39lp.L'', accordingly.

XB-FEAT-29099062

2024-01-24T18:52:23Z

ABell: /* nomenclature */

=''naip.3''=
This is the community wiki page for the gene ''naip.3'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature=
24JAN2024

The following synteny was used to determine new gene names for the ''naip'' genes in ''Xenopus tropicalis'' and ''Xenopus laevis''. There are only L subgenome orthologs of the ''naip'' genes in ''X. laevis''.

'''''X. tropicalis''''' - ''olcn''> ''gtf2h2''> ''naip''(previously:''LOC116406436'')> ''naip.2''(NCBI:780128,previously:''naip'')> ''naip.3''(previously:''LOC733866'')> uncharacterized-LOC...< ''smn1''<

'''''X. laevis L''''' - ''ocln.L''> ''naipp.L''(previously:''LOC108695680'')> ''naip.2.L''(NCBI:108695682,previously:''naip.L'')> ''naip.3.L''(previously:''LOC121395359'')> ''naip.4.L''(previously:''LOC108717703'')> ''naip.5.L''(previously:''LOC108717696'')> ''smn1.L''<

'''''X. laevis S''''' - ocln.S> gtf2h2.S> smn1.S<

''naip'', ''naipp.L'' - XB-GENEPAGE-29091370

''naip.2'', ''naip.2.L'' - XB-GENEPAGE-1011762

''naip.3'', ''naip.3.L'' - XB-GENEPAGE-29099062

''naip.4.L'' - XB-GENEPAGE- new genepage requested (tbd)

''naip.5.L'' - XB-GENEPAGE- new genepage requested (tbd)

Gene models and NCBI IDs were moved accordingly.

XB-FEAT-1011762

2024-01-24T18:46:57Z

ABell: /* nomenclature */

=''naip.2''=
This is the community wiki page for the gene ''naip.2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature=
24JAN2024

The following synteny was used to determine new gene names for the ''naip'' genes in ''Xenopus tropicalis'' and ''Xenopus laevis''. There are only L subgenome orthologs of the ''naip'' genes in ''X. laevis''.

'''''X. tropicalis''''' - ''olcn''> ''gtf2h2''> ''naip''(previously:''LOC116406436'')> ''naip.2''(NCBI:780128,previously:''naip'')> ''naip.3''(previously:''LOC733866'')> uncharacterized-LOC...< ''smn1''<

'''''X. laevis L''''' - ''ocln.L''> ''naipp.L''(previously:''LOC108695680'')> ''naip.2.L''(NCBI:108695682,previously:''naip.L'')> ''naip.3.L''(previously:''LOC121395359'')> ''naip.4.L''(previously:''LOC108717703'')> ''naip.5.L''(previously:''LOC108717696'')> ''smn1.L''<

'''''X. laevis S''''' - ocln.S> gtf2h2.S> smn1.S<

''naip'', ''naipp.L'' - XB-GENEPAGE-29091370

''naip.2'', ''naip.2.L'' - XB-GENEPAGE-1011762

''naip.3'', ''naip.3.L'' - XB-GENEPAGE-29099062

''naip.4.L'' - XB-GENEPAGE- new genepage requested (tbd)

''naip.5.L'' - XB-GENEPAGE- new genepage requested (tbd)

Gene models and NCBI IDs were moved accordingly.

XB-FEAT-29091370

2024-01-24T18:43:24Z

ABell: /* nomenclature */

=''naip''=
This is the community wiki page for the gene ''naip'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature=
24JAN2024

The following synteny was used to determine new gene names for the ''naip'' genes in ''Xenopus tropicalis'' and ''Xenopus laevis''. There are only L subgenome orthologs of the ''naip'' genes in ''X. laevis''.

'''''X. tropicalis''''' - ''olcn''> ''gtf2h2''> ''naip''(previously:''LOC116406436'')> ''naip.2''(NCBI:780128,previously:''naip'')> ''naip.3''(previously:''LOC733866'')> uncharacterized-LOC...< ''smn1''<

'''''X. laevis L''''' - ''ocln.L''> ''naipp.L''(previously:''LOC108695680'')> ''naip.2.L''(NCBI:108695682,previously:''naip.L'')> ''naip.3.L''(previously:''LOC121395359'')> ''naip.4.L''(previously:''LOC108717703'')> ''naip.5.L''(previously:''LOC108717696'')> ''smn1.L''<

'''''X. laevis S''''' - ocln.S> gtf2h2.S> smn1.S<

''naip'', ''naipp.L'' - XB-GENEPAGE-29091370

''naip.2'', ''naip.2.L'' - XB-GENEPAGE-1011762

''naip.3'', ''naip.3.L'' - XB-GENEPAGE-29099062

''naip.4.L'' - XB-GENEPAGE- new genepage requested (tbd)

''naip.5.L'' - XB-GENEPAGE- new genepage requested (tbd)

Gene models and NCBI IDs were moved accordingly.

XB-FEAT-1011762

2024-01-24T18:41:35Z

ABell: /* naip.2 */

=''naip.2''=
This is the community wiki page for the gene ''naip.2'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature=
24JAN2024

The following synteny was used to determine new gene names for the ''naip'' genes in ''Xenopus tropicalis'' and ''Xenopus laevis''. There are only L subgenome orthologs of the ''naip'' genes in ''X. laevis''.

'''''X. tropicalis''''' - ''olcn''> ''gtf2h2''> ''naip''(previously:''LOC116406436'')> ''naip.2''(NCBI:780128,previously:''naip'')> ''naip.3''(previously:''LOC733866'')> uncharacterized-LOC...< ''smn1''<

'''''X. laevis L''''' - ''ocln.L''> ''naipp.L''(previously:''LOC108695680'')> ''naip.2.L''(NCBI:108695682,previously:''naip.L'')> ''naip.3.L''(previously:''LOC121395359'')> ''naip.4.L''(previously:''LOC108717703'')> ''naip.5.L''(previously:''LOC108717696'')> ''smn1.L''<

'''''X. laevis S''''' - ocln.S> gtf2h2.S> smn1.S<

''naip'', ''naip.L'' - XB-GENEPAGE-29091370

''naip.2'', ''naip.2.L'' - XB-GENEPAGE-1011762

''naip.3'', ''naip.3.L'' - XB-GENEPAGE-29099062

''naip.4.L'' - XB-GENEPAGE- new genepage requested (tbd)

''naip.5.L'' - XB-GENEPAGE- new genepage requested (tbd)

Gene models and NCBI IDs were moved accordingly.

XB-FEAT-29099062

2024-01-24T18:41:20Z

ABell: /* naip.3 */

=''naip.3''=
This is the community wiki page for the gene ''naip.3'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature=
24JAN2024

The following synteny was used to determine new gene names for the ''naip'' genes in ''Xenopus tropicalis'' and ''Xenopus laevis''. There are only L subgenome orthologs of the ''naip'' genes in ''X. laevis''.

'''''X. tropicalis''''' - ''olcn''> ''gtf2h2''> ''naip''(previously:''LOC116406436'')> ''naip.2''(NCBI:780128,previously:''naip'')> ''naip.3''(previously:''LOC733866'')> uncharacterized-LOC...< ''smn1''<

'''''X. laevis L''''' - ''ocln.L''> ''naipp.L''(previously:''LOC108695680'')> ''naip.2.L''(NCBI:108695682,previously:''naip.L'')> ''naip.3.L''(previously:''LOC121395359'')> ''naip.4.L''(previously:''LOC108717703'')> ''naip.5.L''(previously:''LOC108717696'')> ''smn1.L''<

'''''X. laevis S''''' - ocln.S> gtf2h2.S> smn1.S<

''naip'', ''naip.L'' - XB-GENEPAGE-29091370

''naip.2'', ''naip.2.L'' - XB-GENEPAGE-1011762

''naip.3'', ''naip.3.L'' - XB-GENEPAGE-29099062

''naip.4.L'' - XB-GENEPAGE- new genepage requested (tbd)

''naip.5.L'' - XB-GENEPAGE- new genepage requested (tbd)

Gene models and NCBI IDs were moved accordingly.

XB-FEAT-29099062

2024-01-24T18:41:10Z

ABell: Created page with "=''naip.3''= This is the community wiki page for the gene ''naip.3'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase =nomenclature= 24JAN2024 The following synteny was used to determine new gene names for the ''naip'' genes in ''Xenopus tropicalis'' and ''Xenopus laevis''. There are only L subgenome orthologs of the ''naip'' genes in ''X. laevis''. '''''X. tropicalis''''' - ''olcn''> ''gtf2h2..."

=''naip.3''=
This is the community wiki page for the gene ''naip.3'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature=
24JAN2024

The following synteny was used to determine new gene names for the ''naip'' genes in ''Xenopus tropicalis'' and ''Xenopus laevis''. There are only L subgenome orthologs of the ''naip'' genes in ''X. laevis''.

'''''X. tropicalis''''' - ''olcn''> ''gtf2h2''> ''naip''(previously:''LOC116406436'')> ''naip.2''(NCBI:780128,previously:''naip'')> ''naip.3''(previously:''LOC733866'')> uncharacterized-LOC...< ''smn1''<

'''''X. laevis L''''' - ''ocln.L''> ''naipp.L''(previously:''LOC108695680'')> ''naip.2.L''(NCBI:108695682,previously:''naip.L'')> ''naip.3.L''(previously:''LOC121395359'')> ''naip.4.L''(previously:''LOC108717703'')> ''naip.5.L''(previously:''LOC108717696'')> ''smn1.L''<

'''''X. laevis S''''' - ocln.S> gtf2h2.S> smn1.S<

''naip'', ''naip.L'' - XB-GENEPAGE-29091370

''naip.2'', ''naip.2.L'' - XB-GENEPAGE-1011762

''naip.3'', ''naip.3.L'' - XB-GENEPAGE-29099062

''naip.4.L'' - XB-GENEPAGE- new genepage requested (tbd)

''naip.5.L'' - XB-GENEPAGE- new genepage requested (tbd)

Gene models and NCBI IDs were moved accordingly.

XB-FEAT-1011762

2024-01-24T18:40:32Z

ABell: /* naip.2 */

=''naip.2''=
This is the community wiki page for the gene ''naip'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature=
24JAN2024

The following synteny was used to determine new gene names for the ''naip'' genes in ''Xenopus tropicalis'' and ''Xenopus laevis''. There are only L subgenome orthologs of the ''naip'' genes in ''X. laevis''.

'''''X. tropicalis''''' - ''olcn''> ''gtf2h2''> ''naip''(previously:''LOC116406436'')> ''naip.2''(NCBI:780128,previously:''naip'')> ''naip.3''(previously:''LOC733866'')> uncharacterized-LOC...< ''smn1''<

'''''X. laevis L''''' - ''ocln.L''> ''naipp.L''(previously:''LOC108695680'')> ''naip.2.L''(NCBI:108695682,previously:''naip.L'')> ''naip.3.L''(previously:''LOC121395359'')> ''naip.4.L''(previously:''LOC108717703'')> ''naip.5.L''(previously:''LOC108717696'')> ''smn1.L''<

'''''X. laevis S''''' - ocln.S> gtf2h2.S> smn1.S<

''naip'', ''naip.L'' - XB-GENEPAGE-29091370

''naip.2'', ''naip.2.L'' - XB-GENEPAGE-1011762

''naip.3'', ''naip.3.L'' - XB-GENEPAGE-29099062

''naip.4.L'' - XB-GENEPAGE- new genepage requested (tbd)

''naip.5.L'' - XB-GENEPAGE- new genepage requested (tbd)

Gene models and NCBI IDs were moved accordingly.

XB-FEAT-29091370

2024-01-24T18:39:39Z

ABell: Created page with "=''naip''= This is the community wiki page for the gene ''naip'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase =nomenclature= 24JAN2024 The following synteny was used to determine new gene names for the ''naip'' genes in ''Xenopus tropicalis'' and ''Xenopus laevis''. There are only L subgenome orthologs of the ''naip'' genes in ''X. laevis''. '''''X. tropicalis''''' - ''olcn''> ''gtf2h2''> '..."

=''naip''=
This is the community wiki page for the gene ''naip'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature=
24JAN2024

The following synteny was used to determine new gene names for the ''naip'' genes in ''Xenopus tropicalis'' and ''Xenopus laevis''. There are only L subgenome orthologs of the ''naip'' genes in ''X. laevis''.

'''''X. tropicalis''''' - ''olcn''> ''gtf2h2''> ''naip''(previously:''LOC116406436'')> ''naip.2''(NCBI:780128,previously:''naip'')> ''naip.3''(previously:''LOC733866'')> uncharacterized-LOC...< ''smn1''<

'''''X. laevis L''''' - ''ocln.L''> ''naipp.L''(previously:''LOC108695680'')> ''naip.2.L''(NCBI:108695682,previously:''naip.L'')> ''naip.3.L''(previously:''LOC121395359'')> ''naip.4.L''(previously:''LOC108717703'')> ''naip.5.L''(previously:''LOC108717696'')> ''smn1.L''<

'''''X. laevis S''''' - ocln.S> gtf2h2.S> smn1.S<

''naip'', ''naip.L'' - XB-GENEPAGE-29091370

''naip.2'', ''naip.2.L'' - XB-GENEPAGE-1011762

''naip.3'', ''naip.3.L'' - XB-GENEPAGE-29099062

''naip.4.L'' - XB-GENEPAGE- new genepage requested (tbd)

''naip.5.L'' - XB-GENEPAGE- new genepage requested (tbd)

Gene models and NCBI IDs were moved accordingly.

XB-FEAT-29085226

2024-01-23T18:55:57Z

ABell: /* nomenclature */

=nlrp3l=
This is the community wiki page for the gene ''nlrp3l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase

=nomenclature=
23JAN2024

Gene symbol changed from ''LOC101731251'' to ''nlrp3l'' to reflect that it is like the NLRP3 genes in humans, while we work out the specific family and member number of this particular gene in an ongoing review of NLR type genes.

Also the ''X. laevis'' L subgenome homeolog ''LOC108710809.L'' was identified based on synteny and sequence similarity and added to this genepage.

''LOC101731251'' and ''LOC108710809'' were added as synonyms.

There is no S subgenome homeolog of this gene in the syntenic equivalent locus on the 1S chromosome according to the current genome annotation.

XB-FEAT-29085226

2024-01-23T18:52:47Z

ABell: Created page with "=nlrp3l= This is the community wiki page for the gene ''nlrp3l'' please feel free to add any information that is relevant to this gene that is not already captured elsewhere in Xenbase =nomenclature= 23JAN2024 Gene symbol changed from ''LOC101731251'' to ''nlrp3l'' to reflect that it is like the NLRP3 genes in humans, while we work out the specific family and member number of this particular gene in an ongoing review of NLR type genes. Also the ''X. laevis'' L subgen..."